Output file comparing the sites in two vcf files Vcftools -vcf input_file.vcf -remove-indels -recode -recode-INFO-all -out SNPs_only Output a new vcf file from the input vcf file that removes any indel sites Vcftools -gzvcf input_ -freq -chr 1 -out chr1_analysis Output allele frequency for all sites in the input vcf file from chromosome 1 The tools provided will be used mainly to summarize data, run calculations on data, filter out data, and convert data into other useful file formats. Vcftools is a suite of functions for use on genetic variation data in the form of VCF and BCF files. Vcftools v0.1.14 - Utilities for the variant call format (VCF) and binary variant call format (BCF) Vcftools(man) 05 January 2016 vcftools(man)
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |